Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | P | Q | R | S | T | U | V | W | X _ _accessors (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _accum_func() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _add_element() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Nodes method) _agg_examples_doc (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _agg_see_also_doc (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _align_for_op() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _align_frame() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _align_series() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _append() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _arith_method() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _arith_method_with_reindex() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _as_manager() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _attrs (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _AXIS_LEN (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _AXIS_ORDERS (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _AXIS_TO_AXIS_NUMBER (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _box_col_values() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _cache (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _calculate() (AlloViz.Wrappers.AlloViz_w.AlloViz_Backbone_Dihs method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Base method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi1 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi2 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi3 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi4 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Dihs method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Phi method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Psi method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Sidechain_Dihs method) (AlloViz.Wrappers.Base.Base method) (AlloViz.Wrappers.Base.Combined_Dihs method) (AlloViz.Wrappers.Base.Combined_Dihs_Avg method) (AlloViz.Wrappers.Base.Multicore method) (AlloViz.Wrappers.CARDS_w.CARDS method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Sidechain_Dihs method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Backbone_Dihs method) (AlloViz.Wrappers.correlationplus_w.correlationplus_CA_LMI method) (AlloViz.Wrappers.correlationplus_w.correlationplus_CA_Pear method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Phi method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Psi method) (AlloViz.Wrappers.dynetan_w.dynetan method) (AlloViz.Wrappers.g_correlation_w.g_correlation_CA_LMI method) (AlloViz.Wrappers.g_correlation_w.g_correlation_CA_MI method) (AlloViz.Wrappers.GSAtools.GSAtools method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_AlphaAngle method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Backbone_Dihs method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Base method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Contacts method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Phi method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Psi method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Atomic_Contacts_Occurrence method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Atomic_Contacts_Strength method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Base method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Contacts method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Energy method) (AlloViz.Wrappers.pytraj_w.pytraj_CA method) (AlloViz.Wrappers.pytraj_w.pytraj_CB method) _can_fast_transpose (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _check_inplace_and_allows_duplicate_labels() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _check_is_chained_assignment_possible() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _check_label_or_level_ambiguity() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _check_setitem_copy() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _clear_item_cache() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _clip_with_one_bound() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _clip_with_scalar() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _cmp_method() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _combine_frame() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _computation() (AlloViz.Wrappers.AlloViz_w.AlloViz_Backbone_Dihs method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Base method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi1 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi2 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi3 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi4 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Dihs method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Phi method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Psi method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Backbone_Dihs method) (AlloViz.Wrappers.correlationplus_w.correlationplus_CA_LMI method) (AlloViz.Wrappers.correlationplus_w.correlationplus_CA_Pear method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Phi method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Psi method) (AlloViz.Wrappers.dynetan_w.dynetan method) (AlloViz.Wrappers.g_correlation_w.g_correlation_CA_LMI method) (AlloViz.Wrappers.g_correlation_w.g_correlation_CA_MI method) (AlloViz.Wrappers.GSAtools.GSAtools method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_AlphaAngle method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Backbone_Dihs method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Base method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Contacts method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Phi method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Psi method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Atomic_Contacts_Occurrence method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Atomic_Contacts_Strength method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Base method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Contacts method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Energy method) (AlloViz.Wrappers.pytraj_w.pytraj_CA method) (AlloViz.Wrappers.pytraj_w.pytraj_CB method) _consolidate() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _consolidate_inplace() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _construct_axes_dict() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _construct_result() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _constructor (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _constructor_from_mgr() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _constructor_sliced (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _constructor_sliced_from_mgr() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _create_data_for_split_and_tight_to_dict() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _data (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _deprecate_downcast() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _dir_additions() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _dir_deletions() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _dispatch_frame_op() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _drop_axis() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _drop_labels_or_levels() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _ensure_valid_index() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _find_valid_index() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _flex_arith_method() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _flex_cmp_method() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _from_arrays() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) _from_mgr() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) _get_agg_axis() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_axis() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_axis_name() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) _get_axis_number() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) _get_axis_resolvers() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_block_manager_axis() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) _get_bool_data() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_cleaned_column_resolvers() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_colors() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_column_array() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_G() (AlloViz.AlloViz.Filtering.Filtering method) _get_index_resolvers() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_item_cache() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_label_or_level_values() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_numeric_data() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_nv() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _get_value() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _getitem_bool_array() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _getitem_multilevel() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _getitem_nocopy() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _getitem_slice() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _gotitem() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _HANDLED_TYPES (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _hidden_attrs (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _indexed_same() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _info_axis (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _info_axis_name (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _info_axis_number (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _info_repr() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _init_mgr() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) _inplace_method() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _internal_ctor() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) _internal_names (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _internal_names_set (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _is_copy (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _is_homogeneous_type (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _is_label_or_level_reference() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _is_label_reference() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _is_level_reference() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _is_mixed_type (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _is_view (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _iset_item() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _iset_item_mgr() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _iset_not_inplace() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _iter_column_arrays() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _ixs() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _logical_func() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _logical_method() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _make_struct_aln() (AlloViz.AlloViz.Classes.Delta method) (AlloViz.Delta method) _maybe_align_series_as_frame() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _maybe_cache_changed() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _maybe_update_cacher() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _metadata (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _mgr (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _min_count_stat_function() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _needs_reindex_multi() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _pad_or_backfill() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _protect_consolidate() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _protein_sel (AlloViz.AlloViz.Classes.Protein attribute) (AlloViz.Protein attribute) _reduce() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _reduce_axis1() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _reindex_axes() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _reindex_multi() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _reindex_with_indexers() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _rename() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _replace_columnwise() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _repr_data_resource_() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _repr_fits_horizontal_() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _repr_fits_vertical_() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _repr_html_() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _repr_latex_() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _reset_cache() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _reset_cacher() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _sanitize_column() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _save_pq() (AlloViz.Wrappers.AlloViz_w.AlloViz_Backbone_Dihs method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Base method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi1 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi2 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi3 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi4 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Dihs method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Phi method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Psi method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Sidechain_Dihs method) (AlloViz.Wrappers.Base.Base method) (AlloViz.Wrappers.Base.Combined_Dihs method) (AlloViz.Wrappers.Base.Combined_Dihs_Avg method) (AlloViz.Wrappers.Base.Multicore method) (AlloViz.Wrappers.CARDS_w.CARDS method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Sidechain_Dihs method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Backbone_Dihs method) (AlloViz.Wrappers.correlationplus_w.correlationplus_CA_LMI method) (AlloViz.Wrappers.correlationplus_w.correlationplus_CA_Pear method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Phi method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Psi method) (AlloViz.Wrappers.dynetan_w.dynetan method) (AlloViz.Wrappers.g_correlation_w.g_correlation_CA_LMI method) (AlloViz.Wrappers.g_correlation_w.g_correlation_CA_MI method) (AlloViz.Wrappers.GSAtools.GSAtools method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_AlphaAngle method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Backbone_Dihs method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Base method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Contacts method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Phi method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Psi method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Atomic_Contacts_Occurrence method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Atomic_Contacts_Strength method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Base method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Contacts method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Energy method) (AlloViz.Wrappers.pytraj_w.pytraj_CA method) (AlloViz.Wrappers.pytraj_w.pytraj_CB method) _series (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _set_axis() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _set_axis_name() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _set_axis_nocheck() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _set_is_copy() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _set_item() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _set_item_frame_value() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _set_item_mgr() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _set_value() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _setitem_array() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _setitem_frame() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _setitem_slice() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _shift_with_freq() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _should_reindex_frame_op() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _show_cbar() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _slice() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _sliced_from_mgr() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _stat_function() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _stat_function_ddof() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _take_with_is_copy() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _to_dict_of_blocks() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _to_latex_via_styler() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _typ (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) _update_inplace() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) _validate_dtype() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) _values (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) _where() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) A abs() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) add() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) add_data() (in module AlloViz.AlloViz.Analysis) add_prefix() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) add_suffix() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) agg() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) aggregate() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) align() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) all() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) All() (in module AlloViz.AlloViz.Filtering) AlloViz module AlloViz.AlloViz module AlloViz.AlloViz.Analysis module AlloViz.AlloViz.Classes module AlloViz.AlloViz.Elements module AlloViz.AlloViz.Filtering module AlloViz.AlloViz.info module AlloViz.AlloViz.trajutils module AlloViz.AlloViz.utils module AlloViz.Wrappers module AlloViz.Wrappers.AlloViz_w module AlloViz.Wrappers.Base module AlloViz.Wrappers.CARDS_w module AlloViz.Wrappers.correlationplus_w module AlloViz.Wrappers.dynetan_w module AlloViz.Wrappers.g_correlation_w module AlloViz.Wrappers.GSAtools module AlloViz.Wrappers.MDEntropy_w module AlloViz.Wrappers.PyInteraph2_w module AlloViz.Wrappers.pytraj_w module AlloViz_Backbone_Dihs (class in AlloViz.Wrappers.AlloViz_w) AlloViz_Base (class in AlloViz.Wrappers.AlloViz_w) AlloViz_Chi1 (class in AlloViz.Wrappers.AlloViz_w) AlloViz_Chi2 (class in AlloViz.Wrappers.AlloViz_w) AlloViz_Chi3 (class in AlloViz.Wrappers.AlloViz_w) AlloViz_Chi4 (class in AlloViz.Wrappers.AlloViz_w) AlloViz_Dihs (class in AlloViz.Wrappers.AlloViz_w) AlloViz_Phi (class in AlloViz.Wrappers.AlloViz_w) AlloViz_Psi (class in AlloViz.Wrappers.AlloViz_w) AlloViz_Sidechain_Dihs (class in AlloViz.Wrappers.AlloViz_w) analyze() (AlloViz.AlloViz.Classes.Protein method) (AlloViz.AlloViz.Filtering.Filtering method) (AlloViz.Protein method) (in module AlloViz.AlloViz.Analysis) analyze_graph() (in module AlloViz.AlloViz.Analysis) any() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) apply() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) apply_async() (AlloViz.AlloViz.utils.dummypool method) applymap() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) asfreq() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) asof() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) assign() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) astype() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) at (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) at_time() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) attrs (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) axes (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) B backfill() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) Base (class in AlloViz.Wrappers.Base) between_time() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) bfill() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) bool() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) boxplot() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) C calculate() (AlloViz.AlloViz.Classes.Protein method) (AlloViz.Protein method) CARDS (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_Backbone_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_Chi1 (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_Chi2 (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_Chi3 (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_Chi4 (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_mediated_Backbone_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_mediated_Chi1 (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_mediated_Chi2 (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_mediated_Chi3 (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_mediated_Chi4 (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_mediated_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_mediated_Phi (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_mediated_Psi (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_mediated_Sidechain_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_Phi (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_Psi (class in AlloViz.Wrappers.CARDS_w) CARDS_Disorder_Sidechain_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_Holistic_Backbone_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_Holistic_Chi1 (class in AlloViz.Wrappers.CARDS_w) CARDS_Holistic_Chi2 (class in AlloViz.Wrappers.CARDS_w) CARDS_Holistic_Chi3 (class in AlloViz.Wrappers.CARDS_w) CARDS_Holistic_Chi4 (class in AlloViz.Wrappers.CARDS_w) CARDS_Holistic_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_Holistic_Phi (class in AlloViz.Wrappers.CARDS_w) CARDS_Holistic_Psi (class in AlloViz.Wrappers.CARDS_w) CARDS_Holistic_Sidechain_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_MI_Backbone_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_MI_Chi1 (class in AlloViz.Wrappers.CARDS_w) CARDS_MI_Chi2 (class in AlloViz.Wrappers.CARDS_w) CARDS_MI_Chi3 (class in AlloViz.Wrappers.CARDS_w) CARDS_MI_Chi4 (class in AlloViz.Wrappers.CARDS_w) CARDS_MI_Dihs (class in AlloViz.Wrappers.CARDS_w) CARDS_MI_Phi (class in AlloViz.Wrappers.CARDS_w) CARDS_MI_Psi (class in AlloViz.Wrappers.CARDS_w) CARDS_MI_Sidechain_Dihs (class in AlloViz.Wrappers.CARDS_w) clip() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) close() (AlloViz.AlloViz.utils.dummypool method) columns (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) combine() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) combine_first() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) Combined_Dihs (class in AlloViz.Wrappers.Base) Combined_Dihs_Avg (class in AlloViz.Wrappers.Base) compare() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) convert_dtypes() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) copy() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) corr() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) correlationplus_Backbone_Dihs (class in AlloViz.Wrappers.correlationplus_w) correlationplus_CA_LMI (class in AlloViz.Wrappers.correlationplus_w) correlationplus_CA_Pear (class in AlloViz.Wrappers.correlationplus_w) correlationplus_Phi (class in AlloViz.Wrappers.correlationplus_w) correlationplus_Psi (class in AlloViz.Wrappers.correlationplus_w) corrwith() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) count() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) cov() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) cummax() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) cummin() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) cumprod() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) cumsum() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) D Delta (class in AlloViz) (class in AlloViz.AlloViz.Classes) describe() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) diff() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) dihedrals_atoms (in module AlloViz.AlloViz.info) div() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) divide() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) dot() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) download_GPCRmd_files() (in module AlloViz.AlloViz.trajutils) download_SCoV2MD_files() (in module AlloViz.AlloViz.trajutils) drop() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) drop_duplicates() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) droplevel() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) dropna() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) dtypes (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) dummypool (class in AlloViz.AlloViz.utils) duplicated() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) dynetan (class in AlloViz.Wrappers.dynetan_w) E Edges (class in AlloViz.AlloViz.Elements) edges_dict (in module AlloViz.AlloViz.Analysis) Element (class in AlloViz.AlloViz.Elements) empty (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) eq() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) equals() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) eval() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) ewm() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) expanding() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) explode() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) F ffill() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) fillna() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) filter() (AlloViz.AlloViz.Classes.Protein method) (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) (AlloViz.Protein method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Backbone_Dihs method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Base method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi1 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi2 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi3 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Chi4 method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Dihs method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Phi method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Psi method) (AlloViz.Wrappers.AlloViz_w.AlloViz_Sidechain_Dihs method) (AlloViz.Wrappers.Base.Base method) (AlloViz.Wrappers.Base.Combined_Dihs method) (AlloViz.Wrappers.Base.Combined_Dihs_Avg method) (AlloViz.Wrappers.Base.Multicore method) (AlloViz.Wrappers.CARDS_w.CARDS method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_mediated_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_Disorder_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_Holistic_Sidechain_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Backbone_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi1 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi2 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi3 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Chi4 method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Dihs method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Phi method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Psi method) (AlloViz.Wrappers.CARDS_w.CARDS_MI_Sidechain_Dihs method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Backbone_Dihs method) (AlloViz.Wrappers.correlationplus_w.correlationplus_CA_LMI method) (AlloViz.Wrappers.correlationplus_w.correlationplus_CA_Pear method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Phi method) (AlloViz.Wrappers.correlationplus_w.correlationplus_Psi method) (AlloViz.Wrappers.dynetan_w.dynetan method) (AlloViz.Wrappers.g_correlation_w.g_correlation_CA_LMI method) (AlloViz.Wrappers.g_correlation_w.g_correlation_CA_MI method) (AlloViz.Wrappers.GSAtools.GSAtools method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_AlphaAngle method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Backbone_Dihs method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Base method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Contacts method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Phi method) (AlloViz.Wrappers.MDEntropy_w.MDEntropy_Psi method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Atomic_Contacts_Occurrence method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Atomic_Contacts_Strength method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Base method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Contacts method) (AlloViz.Wrappers.PyInteraph2_w.PyInteraph2_Energy method) (AlloViz.Wrappers.pytraj_w.pytraj_CA method) (AlloViz.Wrappers.pytraj_w.pytraj_CB method) Filtering (class in AlloViz.AlloViz.Filtering) filteringsl (in module AlloViz.AlloViz.utils) first() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) first_valid_index() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) flags (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) floordiv() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) from_dict() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) from_records() (AlloViz.AlloViz.Elements.Edges class method) (AlloViz.AlloViz.Elements.Element class method) (AlloViz.AlloViz.Elements.Nodes class method) G g_correlation_CA_LMI (class in AlloViz.Wrappers.g_correlation_w) g_correlation_CA_MI (class in AlloViz.Wrappers.g_correlation_w) ge() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) get() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) get_bonded_cys() (in module AlloViz.AlloViz.trajutils) get_GPCRdb_numbering() (in module AlloViz.AlloViz.trajutils) get_pool() (in module AlloViz.AlloViz.utils) GetContacts (class in AlloViz.Wrappers) GetContacts_edges() (in module AlloViz.AlloViz.Filtering) GPCR_Interhelix() (in module AlloViz.AlloViz.Filtering) groupby() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) GSAtools (class in AlloViz.Wrappers.GSAtools) gt() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) H head() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) hist() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) I iat (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) idxmax() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) idxmin() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) iloc (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) index (AlloViz.AlloViz.Elements.Edges attribute) (AlloViz.AlloViz.Elements.Element attribute) (AlloViz.AlloViz.Elements.Nodes attribute) infer_objects() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) info() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) insert() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) interpolate() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) isetitem() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) isin() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) isna() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) isnull() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) items() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) iterrows() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) itertuples() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) J join() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) (AlloViz.AlloViz.utils.dummypool method) K keys() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) kurt() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) kurtosis() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) L last() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) last_valid_index() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) lazy_import() (in module AlloViz.Wrappers.Base) le() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) loc (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) lt() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) M make_list() (in module AlloViz.AlloViz.utils) map() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) mask() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) max() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) MDEntropy_AlphaAngle (class in AlloViz.Wrappers.MDEntropy_w) MDEntropy_Backbone_Dihs (class in AlloViz.Wrappers.MDEntropy_w) MDEntropy_Base (class in AlloViz.Wrappers.MDEntropy_w) MDEntropy_Contacts (class in AlloViz.Wrappers.MDEntropy_w) MDEntropy_Phi (class in AlloViz.Wrappers.MDEntropy_w) MDEntropy_Psi (class in AlloViz.Wrappers.MDEntropy_w) MDTASK (class in AlloViz.Wrappers) mean() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) median() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) melt() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) memory_usage() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) merge() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) metricsl (in module AlloViz.AlloViz.utils) min() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) mod() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) mode() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) module AlloViz AlloViz.AlloViz AlloViz.AlloViz.Analysis AlloViz.AlloViz.Classes AlloViz.AlloViz.Elements AlloViz.AlloViz.Filtering AlloViz.AlloViz.info AlloViz.AlloViz.trajutils AlloViz.AlloViz.utils AlloViz.Wrappers AlloViz.Wrappers.AlloViz_w AlloViz.Wrappers.Base AlloViz.Wrappers.CARDS_w AlloViz.Wrappers.correlationplus_w AlloViz.Wrappers.dynetan_w AlloViz.Wrappers.g_correlation_w AlloViz.Wrappers.GSAtools AlloViz.Wrappers.MDEntropy_w AlloViz.Wrappers.PyInteraph2_w AlloViz.Wrappers.pytraj_w mul() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) Multicore (class in AlloViz.Wrappers.Base) multiply() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) N ndim (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) ne() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) nlargest() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) No_Sequence_Neighbors() (in module AlloViz.AlloViz.Filtering) Nodes (class in AlloViz.AlloViz.Elements) nodes_dict (in module AlloViz.AlloViz.Analysis) notna() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) notnull() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) nsmallest() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) nunique() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) P pad() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) pct_change() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) pipe() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) pivot() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) pivot_table() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) pkgname() (in module AlloViz.AlloViz.utils) pkgsl (in module AlloViz.AlloViz.utils) pool (in module AlloViz.AlloViz.utils) pop() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) pow() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) process_input() (in module AlloViz.AlloViz.trajutils) prod() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) product() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) protein (AlloViz.AlloViz.Classes.Protein attribute) (AlloViz.Protein attribute) Protein (class in AlloViz) (class in AlloViz.AlloViz.Classes) PyInteraph2_Atomic_Contacts_Occurrence (class in AlloViz.Wrappers.PyInteraph2_w) PyInteraph2_Atomic_Contacts_Strength (class in AlloViz.Wrappers.PyInteraph2_w) PyInteraph2_Base (class in AlloViz.Wrappers.PyInteraph2_w) PyInteraph2_Contacts (class in AlloViz.Wrappers.PyInteraph2_w) PyInteraph2_Energy (class in AlloViz.Wrappers.PyInteraph2_w) pytraj_CA (class in AlloViz.Wrappers.pytraj_w) pytraj_CB (class in AlloViz.Wrappers.pytraj_w) Q quantile() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) query() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) R radd() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rank() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rdiv() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) reindex() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) reindex_like() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rename() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rename_axis() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) reorder_levels() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) replace() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) resample() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) reset_index() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rfloordiv() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rgetattr() (in module AlloViz.AlloViz.utils) rhasattr() (in module AlloViz.AlloViz.utils) rmod() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rmul() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rolling() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) round() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rpow() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rsub() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) rtruediv() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) S sample() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) select_dtypes() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) sem() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) set_axis() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) set_flags() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) set_index() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) shape (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) shift() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) single_analysis() (in module AlloViz.AlloViz.Analysis) size (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) skew() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) sort_index() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) sort_values() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) Spatially_distant() (in module AlloViz.AlloViz.Filtering) squeeze() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) stack() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) standardize_resnames() (in module AlloViz.AlloViz.trajutils) std() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) style (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) sub() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) subtract() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) sum() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) swapaxes() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) swaplevel() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) T T (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) tail() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) take() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_clipboard() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_csv() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_dict() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_excel() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_feather() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_gbq() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_hdf() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_html() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_json() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_latex() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_markdown() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_numpy() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_orc() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_parquet() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_period() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_pickle() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_records() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_sql() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_stata() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_string() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_timestamp() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_xarray() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) to_xml() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) transform() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) transpose() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) truediv() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) truncate() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) tz_convert() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) tz_localize() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) U u (AlloViz.AlloViz.Classes.Protein attribute) (AlloViz.Protein attribute) unstack() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) update() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) V value_counts() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) values (AlloViz.AlloViz.Elements.Edges property) (AlloViz.AlloViz.Elements.Element property) (AlloViz.AlloViz.Elements.Nodes property) var() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) view() (AlloViz.AlloViz.Classes.Delta method) (AlloViz.AlloViz.Classes.Protein method) (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) (AlloViz.Delta method) (AlloViz.Protein method) W wait_analyze() (in module AlloViz.AlloViz.Analysis) where() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method) wrappers (in module AlloViz.AlloViz.info) X xs() (AlloViz.AlloViz.Elements.Edges method) (AlloViz.AlloViz.Elements.Element method) (AlloViz.AlloViz.Elements.Nodes method)