AlloViz.AlloViz.Classes

Main AlloViz classes: Protein and Delta

The Protein class is AlloViz’s main class, processing a structure and trajectory(ies) input files and allowing to calculate, analyze and visualize the allosteric communication networks with its associated methods.

The Delta class takes two Protein objects as input to calculate the delta-network to highlight the differences in the allosteric communication between two systems.

Notes

This module is not meant to be used directly, as the classes are imported in the namespace of AlloViz itself.

Classes

Delta(refstate, state2[, pymol_aln])	AlloViz class for calculating a delta-network.
Protein([pdb, trajs, GPCR, name, path, ...])	AlloViz main class.