AlloViz.AlloViz.Filtering.Spatially_distant#

AlloViz.AlloViz.Filtering.Spatially_distant(pkg, data, Interresidue_distance, **kwargs)[source]#

Retain only edges between spatially distant residue pairs

It only retains edges between residue pairs whose CA atoms are minimum a certain number of angstroms away from each other in the initial PDB/structure (default 10 Å). The relationship found between these residues can be considered purely allosteric, as they are spatially distant and have no direct communication but can be found to be interacting/correlated…

Other Parameters:
**kwargs

‘Interresidue_distance’ kwarg can be passed to specify the minimum number of angstroms that the CA atoms of residue pairs should have between each other in the initial PDB/structure (default 10 Å) to be considered spatially distant.