AlloViz.AlloViz.info.wrappers

AlloViz.AlloViz.info.wrappers = {'AlloViz_Backbone_Dihs': ('Dihedral angles', 'AlloViz', 'MI', 'All backbone dihedrals (Phi and psi)'), 'AlloViz_Chi1': ('Dihedral angles', 'AlloViz', 'MI', 'Chi1'), 'AlloViz_Chi2': ('Dihedral angles', 'AlloViz', 'MI', 'Chi2'), 'AlloViz_Chi3': ('Dihedral angles', 'AlloViz', 'MI', 'Chi3'), 'AlloViz_Chi4': ('Dihedral angles', 'AlloViz', 'MI', 'Chi4'), 'AlloViz_Dihs': ('Dihedral angles', 'AlloViz', 'MI', 'All dihedrals'), 'AlloViz_Phi': ('Dihedral angles', 'AlloViz', 'MI', 'Phi'), 'AlloViz_Psi': ('Dihedral angles', 'AlloViz', 'MI', 'Psi'), 'AlloViz_Sidechain_Dihs': ('Dihedral angles', 'AlloViz', 'MI', 'All side-chain dihedrals'), 'CARDS_Disorder_Backbone_Dihs': ('Dihedral angles', 'CARDS', 'Pure-disorder MI', 'All backbone dihedrals (Phi and psi)'), 'CARDS_Disorder_Chi1': ('Dihedral angles', 'CARDS', 'Pure-disorder MI', 'Chi1'), 'CARDS_Disorder_Chi2': ('Dihedral angles', 'CARDS', 'Pure-disorder MI', 'Chi2'), 'CARDS_Disorder_Chi3': ('Dihedral angles', 'CARDS', 'Pure-disorder MI', 'Chi3'), 'CARDS_Disorder_Chi4': ('Dihedral angles', 'CARDS', 'Pure-disorder MI', 'Chi4'), 'CARDS_Disorder_Dihs': ('Dihedral angles', 'CARDS', 'Pure-disorder MI', 'All dihedrals'), 'CARDS_Disorder_Phi': ('Dihedral angles', 'CARDS', 'Pure-disorder MI', 'Phi'), 'CARDS_Disorder_Psi': ('Dihedral angles', 'CARDS', 'Pure-disorder MI', 'Psi'), 'CARDS_Disorder_Sidechain_Dihs': ('Dihedral angles', 'CARDS', 'Pure-disorder MI', 'All side-chain dihedrals'), 'CARDS_Disorder_mediated_Backbone_Dihs': ('Dihedral angles', 'CARDS', 'Disorder-mediated MI', 'All backbone dihedrals (Phi and psi)'), 'CARDS_Disorder_mediated_Chi1': ('Dihedral angles', 'CARDS', 'Disorder-mediated MI', 'Chi1'), 'CARDS_Disorder_mediated_Chi2': ('Dihedral angles', 'CARDS', 'Disorder-mediated MI', 'Chi2'), 'CARDS_Disorder_mediated_Chi3': ('Dihedral angles', 'CARDS', 'Disorder-mediated MI', 'Chi3'), 'CARDS_Disorder_mediated_Chi4': ('Dihedral angles', 'CARDS', 'Disorder-mediated MI', 'Chi4'), 'CARDS_Disorder_mediated_Dihs': ('Dihedral angles', 'CARDS', 'Disorder-mediated MI', 'All dihedrals'), 'CARDS_Disorder_mediated_Phi': ('Dihedral angles', 'CARDS', 'Disorder-mediated MI', 'Phi'), 'CARDS_Disorder_mediated_Psi': ('Dihedral angles', 'CARDS', 'Disorder-mediated MI', 'Psi'), 'CARDS_Disorder_mediated_Sidechain_Dihs': ('Dihedral angles', 'CARDS', 'Disorder-mediated MI', 'All side-chain dihedrals'), 'CARDS_Holistic_Backbone_Dihs': ('Dihedral angles', 'CARDS', 'Holistic MI', 'All backbone dihedrals (Phi and psi)'), 'CARDS_Holistic_Chi1': ('Dihedral angles', 'CARDS', 'Holistic MI', 'Chi1'), 'CARDS_Holistic_Chi2': ('Dihedral angles', 'CARDS', 'Holistic MI', 'Chi2'), 'CARDS_Holistic_Chi3': ('Dihedral angles', 'CARDS', 'Holistic MI', 'Chi3'), 'CARDS_Holistic_Chi4': ('Dihedral angles', 'CARDS', 'Holistic MI', 'Chi4'), 'CARDS_Holistic_Dihs': ('Dihedral angles', 'CARDS', 'Holistic MI', 'All dihedrals'), 'CARDS_Holistic_Phi': ('Dihedral angles', 'CARDS', 'Holistic MI', 'Phi'), 'CARDS_Holistic_Psi': ('Dihedral angles', 'CARDS', 'Holistic MI', 'Psi'), 'CARDS_Holistic_Sidechain_Dihs': ('Dihedral angles', 'CARDS', 'Holistic MI', 'All side-chain dihedrals'), 'CARDS_MI_Backbone_Dihs': ('Dihedral angles', 'CARDS', 'MI', 'All backbone dihedrals (Phi and psi)'), 'CARDS_MI_Chi1': ('Dihedral angles', 'CARDS', 'MI', 'Chi1'), 'CARDS_MI_Chi2': ('Dihedral angles', 'CARDS', 'MI', 'Chi2'), 'CARDS_MI_Chi3': ('Dihedral angles', 'CARDS', 'MI', 'Chi3'), 'CARDS_MI_Chi4': ('Dihedral angles', 'CARDS', 'MI', 'Chi4'), 'CARDS_MI_Dihs': ('Dihedral angles', 'CARDS', 'MI', 'All dihedrals'), 'CARDS_MI_Phi': ('Dihedral angles', 'CARDS', 'MI', 'Phi'), 'CARDS_MI_Psi': ('Dihedral angles', 'CARDS', 'MI', 'Psi'), 'CARDS_MI_Sidechain_Dihs': ('Dihedral angles', 'CARDS', 'MI', 'All side-chain dihedrals'), 'GetContacts': ('Contacts', 'GetContacts', 'None', 'Contacts occurrence'), 'MDEntropy_AlphaAngle': ('Dihedral angles', 'MDEntropy', 'MI', 'Alpha angle'), 'MDEntropy_Backbone_Dihs': ('Dihedral angles', 'MDEntropy', 'MI', 'All backbone dihedrals (Phi and psi)'), 'MDEntropy_Contacts': ('Contacts', 'MDEntropy', 'MI', 'Contacts occurrence'), 'MDEntropy_Phi': ('Dihedral angles', 'MDEntropy', 'MI', 'Phi'), 'MDEntropy_Psi': ('Dihedral angles', 'MDEntropy', 'MI', 'Psi'), 'MDTASK': ('Atomic displacements', 'MD-TASK', "Pearson's", 'Carbon α'), 'PyInteraph2_Atomic_Contacts_Occurrence': ('Contacts', 'PyInteraph2', 'None', 'Atomic contacts occurrence'), 'PyInteraph2_Atomic_Contacts_Strength': ('Contacts', 'PyInteraph2', 'None', 'Atomic contacts strength'), 'PyInteraph2_Contacts': ('Contacts', 'PyInteraph2', 'None', 'Contacts occurrence'), 'PyInteraph2_Energy': ('Interaction energy', 'PyInteraph2', 'None', 'Whole residue'), 'correlationplus_Backbone_Dihs': ('Dihedral angles', 'correlationplus', "Pearson's", 'All backbone dihedrals (Phi and psi)'), 'correlationplus_CA_LMI': ('Atomic displacements', 'correlationplus', 'LMI', 'Carbon α'), 'correlationplus_CA_Pear': ('Atomic displacements', 'correlationplus', "Pearson's", 'Carbon α'), 'correlationplus_Phi': ('Dihedral angles', 'correlationplus', "Pearson's", 'Phi'), 'correlationplus_Psi': ('Dihedral angles', 'correlationplus', "Pearson's", 'Psi'), 'dynetan': ('Atomic displacements', 'dynetan', 'MI', 'Whole residue'), 'pytraj_CA': ('Atomic displacements', 'pytraj', "Pearson's", 'Carbon α'), 'pytraj_CB': ('Atomic displacements', 'pytraj', "Pearson's", 'Carbon β')}

Dictionary with all the available network construction methods and their information

All network construction methods available in AlloViz are the keys of the dictionary and each of the values is a 4-member tuple. In order, the tuple contains the kind of information it uses for network construction, the main package name (not the same as the AlloViz accession name of the wrapper), the correlaton metric they use if applicable, and the atom/angle whose information it uses.