AlloViz.Wrappers

Wrappers of AlloViz’s network construction methods/packages

Each module contains the class(es) that wrap the code of a package used by AlloViz as a network construction method. They are used to send their calculations through the AlloViz code without needing to execute them independently, and process their results to store them in AlloViz objects. They are child classes of Base module’s Base class and other classes therein (by multiple inheritance).

Modules

AlloViz_w

AlloViz's own network construction method wrapper

Base

Base module for package/software wrapping for AlloViz

CARDS_w

CARDS network construction method wrapper

GSAtools

GSAtools wrapper

GetContacts(protein, d)

GetContacts' contact frequencies

MDEntropy_w

MDEntropy wrapper

MDTASK(protein, d)

MD-TASK's Pearson's correlation of CA atoms

PyInteraph2_w

PyInteraph2 wrapper

correlationplus_w

correlationplus wrapper

dynetan_w

dynetan wrapper

g_correlation_w

g_correlation wrapper

pytraj_w

pytraj wrapper